- Basic information
- CohesinDB ID: CDBP00418315
- Locus: chr21-36096867-36098437
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Data sourse: GSE97394, GSE143937, GSE67783, GSE86191, GSE138405, ENCSR879KXD, GSE105028, GSE206145, ENCSR153HNT, GSE111537, GSE126990, ENCSR000ECS, GSE64758, GSE73207
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Cell type: RPE, H1-hESC, Hela-Kyoto, HCT-116, TF-1, HeLa-S3, HUES64, K-562, OCI-AML-3, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 43%,
"7_Enh": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZSCAN5C, SOX2, MEIS2, HNF1A, FOXA1, PBX2, UBTF, ATF3, INSM2, CHD7, PRDM1, RUNX3, ZBTB44, MORC2, ZNF189, SMARCE1, PAX5, TP63, CDX2, ZNF629, JMJD1C, ELF1, TRIM28, BCLAF1, ESR1, MLL, HNF1B, TP73, CTCF, TCF12, JUN, EP300, GATA6, DPF2, TRIM24, SOX6, ZNF350, TEAD4, KMT2B, PDX1, TFAP2C, EED, RBPJ, GLIS1, NANOG, POU2F2, POU5F1, ID3, CTBP1, MTA2, ZBTB17, ZBTB48, STAT1, SRF, NBN, ARID3A, ERG, HOXC5, ZNF341, MYC, EOMES, SMARCA4, ARID1B, RAD21, NKX2-1, STAT3, IKZF1, RCOR1, LEF1, NR3C1, CEBPB, KMT2A, CREB1, FEZF1, ZHX2, SPI1, KLF17, HDAC2, GATA2, FLI1, RELB, ZNF554, ATF1, RUNX1, CTNNB1, HDAC1, CEBPA, ZFX, SMAD3, TRIM22, ZMIZ1, SMARCC1, PRDM10, MEF2A, ZNF384, ZNF35, SMAD2, OSR2, ZNF184, PBX4, DAXX, ATF2, HMBOX1, ZEB2, CBFA2T3, ETV6, SP2, CHD1, CDK8, FOS, PBX3, MED1, TERF1, MYB, SCRT2, SETDB1, STAT5A, NIPBL, TFAP2A, SP1, BCL11A, REST, ZBTB7A, CCNT2, ATF7, HOXA9, CTBP2, PHIP, BCOR, PRDM6, NFATC3, PAX7, CBFA2T2, MEF2B, CREM, MEIS1, SS18, ZNF600, GTF2B, WT1, MEF2C, HOXB13, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, NEUROD1, ZIC2, SKIL, BATF, TAL1, MAX, GATA1, ZNF143, KLF4, SP7, GFI1B, NR2F2, ZNF512, TP53, PKNOX1, MED, T, TBX21, BHLHE40, PAX3-FOXO1, ZNF366, NCOR1, IKZF2, SCRT1, BRD4, JUND, RNF2, MAZ, MEF2D, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): DOP1B,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000142197,
- Related loop:
chr21:34325000-34350000~~chr21:36075000-36100000,
chr21:34350000-34375000~~chr21:36075000-36100000,
chr21:34350000-34375000~~chr21:36100000-36125000,
chr21:34675000-34700000~~chr21:36100000-36125000,
chr21:34875000-34900000~~chr21:36100000-36125000,
chr21:35850000-35875000~~chr21:36100000-36125000,
chr21:35925000-35950000~~chr21:36100000-36125000,
chr21:35950000-35975000~~chr21:36075000-36100000,
chr21:35950000-35975000~~chr21:36100000-36125000,
chr21:36059311-36061185~~chr21:36103004-36105170,
chr21:36059347-36061711~~chr21:36102970-36104752,
chr21:36075000-36100000~~chr21:36175000-36200000,
chr21:36075000-36100000~~chr21:38250000-38275000,