Deatailed information for cohesin site CDBP00418329
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00418329
- Locus: chr21-36133297-36137447
- Data sourse: GSE206145-GSE177045, GSE104888, GSE72082, GSE126634, GSE116868, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, GSE165895, ENCSR000EFJ, GSE67783, GSE86191, GSE138405, GSE101921, GSE206145-NatGen2015, GSE120943, ENCSR198ZYJ, GSE130135, GSE116344, ENCSR703TNG, GSE118494, GSE98367, GSE206145, ENCSR000BTQ, ENCSR853VWZ, GSE110061, GSE111913, ENCSR153HNT, GSE68388, GSE83726, ENCSR000ECS, GSE38411
- Cell type: MDM, RH4, HuCC-T1, H9-hESC, RPE, Fibroblast, HeLa-S3, IMR-90, K-562, BCBL-1, HFFc6, DKO, Monocytes, MB157, SK-N-SH, RT-112, HAP1, Macrophage, MCF-7, Hela-Kyoto, HCT-116, HEK293T, Neurons-H1, A-549, HCAEC, OCI-AML-3, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 17% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.700
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"2_TssAFlnk": 19%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: RUNX1, FOSL1, MAFG, ZSCAN5D, EZH2phosphoT487, MYCN, ZFX, ZBTB17, ZBTB48, MAFF, STAT1, FOXA1, CBX8, RELA, IRF2, AHR, ZFP36, NRIP1, ZNF143, CBX2, ELF1, ESR1, C11orf30, TCF12, MAFK, SPI1, AR, GATA6, INTS13, RNF2, BRD4, PHIP, ZNF766, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): CBR3,HLCS,SIM2,DOP1B,SMIM11A,MORC3,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 63
- Number of somatic mutations (non-coding): 73
- Related genes and loops
- Related gene: ENSG00000205670, ENSG00000159231, ENSG00000142197, ENSG00000159256, ENSG00000159259, ENSG00000159263, ENSG00000159267,
- Related loop: chr21:27500000-27525000~~chr21:36125000-36150000, chr21:34350000-34375000~~chr21:36125000-36150000, chr21:36122381-36123542~~chr21:36140871-36142703, chr21:36122898-36124126~~chr21:36134610-36136702, chr21:36125000-36150000~~chr21:36225000-36250000, chr21:36125000-36150000~~chr21:36300000-36325000, chr21:36125000-36150000~~chr21:36325000-36350000, chr21:36125000-36150000~~chr21:36350000-36375000, chr21:36125000-36150000~~chr21:36375000-36400000, chr21:36125000-36150000~~chr21:36500000-36525000, chr21:36125000-36150000~~chr21:36575000-36600000, chr21:36125000-36150000~~chr21:36625000-36650000, chr21:36125000-36150000~~chr21:36675000-36700000, chr21:36125000-36150000~~chr21:36900000-36925000, chr21:36125000-36150000~~chr21:36925000-36950000, chr21:36125000-36150000~~chr21:38150000-38175000, chr21:36125000-36150000~~chr21:38325000-38350000, chr21:36125000-36150000~~chr21:38350000-38375000, chr21:36140628-36142797~~chr21:36208896-36211059, chr21:36140628-36142797~~chr21:36329784-36332238, chr21:36140628-36142797~~chr21:36388297-36390535, chr21:36140648-36142704~~chr21:36389208-36390546, chr21:36140770-36142598~~chr21:36208928-36210883, chr21:36140783-36142792~~chr21:36329776-36331881, chr21:36140783-36142792~~chr21:36388547-36390538, chr21:36140789-36142775~~chr21:36208898-36210957, chr21:36140789-36142775~~chr21:36329509-36332676, chr21:36140792-36142611~~chr21:36208845-36210808, chr21:36140792-36142611~~chr21:36330014-36331898, chr21:36140799-36142667~~chr21:36329820-36331841, chr21:36140799-36142837~~chr21:36208339-36210839, chr21:36140799-36142837~~chr21:36329790-36332543, chr21:36140808-36142792~~chr21:36208893-36211062, chr21:36140808-36142792~~chr21:36389186-36390767, chr21:36140808-36142792~~chr21:36419122-36421037, chr21:36140818-36142825~~chr21:36208180-36210735, chr21:36140822-36142823~~chr21:36208825-36210883, chr21:36140822-36142823~~chr21:36329998-36331844, chr21:36140824-36142795~~chr21:36208849-36210862, chr21:36140824-36142795~~chr21:36329821-36332549, chr21:36140824-36142795~~chr21:36389196-36390710, chr21:36140824-36142795~~chr21:36419273-36421104, chr21:36140828-36142593~~chr21:36208784-36210767, chr21:36140829-36142646~~chr21:36389162-36390561, chr21:36140830-36142847~~chr21:36329991-36331896, chr21:36140830-36142847~~chr21:36389185-36390513, chr21:36140835-36142753~~chr21:36388314-36390557, chr21:36140836-36142645~~chr21:36208979-36210847, chr21:36140837-36142525~~chr21:36208955-36210590, chr21:36140837-36142525~~chr21:36330185-36331807, chr21:36140837-36142525~~chr21:36389208-36390500, chr21:36140838-36142714~~chr21:36208696-36210781, chr21:36140838-36142724~~chr21:36330105-36331857, chr21:36140838-36142786~~chr21:36208808-36211018, chr21:36140838-36142786~~chr21:36329955-36332030, chr21:36140838-36142786~~chr21:36388412-36390522, chr21:36140843-36142531~~chr21:36208942-36210568, chr21:36140848-36142815~~chr21:36208865-36210865, chr21:36140848-36142815~~chr21:36329998-36332133, chr21:36140849-36142584~~chr21:36208920-36210789, chr21:36140850-36142837~~chr21:36208890-36210845, chr21:36140850-36142837~~chr21:36329788-36331839, chr21:36140851-36142527~~chr21:36330219-36331784, chr21:36140852-36142557~~chr21:36208778-36210979, chr21:36140852-36142574~~chr21:36330027-36331746, chr21:36140857-36142570~~chr21:36330220-36331778, chr21:36140862-36142780~~chr21:36208188-36210796, chr21:36140863-36142602~~chr21:36208770-36210834, chr21:36140866-36142633~~chr21:36208896-36210832, chr21:36140866-36142633~~chr21:36330006-36331764, chr21:36140870-36142745~~chr21:36209005-36210744, chr21:36140870-36142745~~chr21:36330021-36331732, chr21:36140871-36142703~~chr21:36208897-36210863, chr21:36140871-36142703~~chr21:36330000-36331880, chr21:36140877-36142726~~chr21:36330374-36331962, chr21:36140896-36142511~~chr21:36330240-36331785,
Tools:
- Assay
