- Basic information
- CohesinDB ID: CDBP00418339
- Locus: chr21-36155298-36159915
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, ENCSR501LQA, GSE116868, GSE126634, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, ENCSR330ELC, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, GSE143937, GSE165895, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE93080, GSE101921, GSE51234, GSE206145-NatGen2015, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE94872, ENCSR895JMI, GSE118494, ENCSR338DUC, GSE98367, ENCSR193NSH, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, ENCSR247LSH, GSE62063, ENCSR000EHX, ENCSR748MVX, ENCSR767DFK, GSE206145, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, GSE110061, GSE129526, GSE111913, GSE155324, ENCSR335RKQ, ENCSR054FKH, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, GSE126755, ENCSR000ECS, GSE64758, GSE38411
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Cell type: MDM, RH4, GM10847, GM2610, SLK, GM19240, OCI-AML-3, HSPC, CVI-hiPSC, Liver, GP5d, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HEKn, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, H1-hESC, SNYDER, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, Macrophage, MCF-7, GM12892, Ramos, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, Neurons-H1, A-549, HUVEC, HCAEC, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 45% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.356
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"2_TssAFlnk": 24%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, FOXA1, RXRB, MLL4, KDM3A, ZBTB7B, HDGF, MEN1, THAP1, ZBTB44, IKZF3, PAX5, ZNF320, SFPQ, TEAD1, ZNF121, LMO2, OCA2, MED26, HDAC8, ZNF561, ARID5B, SOX5, PAX8, E2F4, DEK, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, CTBP1, STAT1, SAP130, ERG, ZBTB8A, EZH1, SMARCA4, RFX1, TOP1, FOXK2, ZNF398, RCOR1, NR2F6, CEBPB, HNRNPL, RBM34, CREB1, BMPR1A, GABPB1, ZHX2, MIXL1, KLF17, GATA2, MXD3, FLI1, HCFC1, DRAP1, MXI1, HCFC1R1, RUNX1, HDAC1, NKX2-2, CEBPA, REPIN1, SP5, TRIM22, SMARCC1, PRDM10, ZXDC, TFDP1, ZBTB10, SNIP1, SP2, SMARCB1, PML, PIAS1, SMAD1, NR1H2, EVI1, MBD1, GSPT2, IKZF5, ARID2, RBM25, MBD2, ELL2, NFATC3, ZNF207, CBX3, CREM, CHD2, NFATC1, SS18, WT1, MEF2C, NEUROD1, JUNB, ZFP36, TCF4, MAF1, SPIB, PLAG1, KLF4, BCL11B, ZFP69B, ZNF281, ZBTB6, MED, EGR2, ELF3, RBM14, ARID4B, RXR, EGLN2, ZBTB26, NCOR1, HSF1, SCRT1, ILF3, FOSL1, ZNF660, XBP1, KDM4B, PBX2, ZNF596, HNRNPK, ATF3, ZFP64, HNRNPUL1, RUNX3, CBFB, TP63, ZSCAN4, MITF, ZNF467, MAF, INTS11, JMJD1C, ELF1, RBM39, SNAI2, KLF10, SMAD5, FUS, CTCF, TAF3, JUN, MNT, ZBTB20, LMO1, RYBP, DPF2, IRF4, ZNF677, PDX1, TFAP2C, RBPJ, MLX, MTA2, ZBTB17, ZBTB48, ZSCAN21, NONO, SRF, KDM4A, TSHZ1, HOMEZ, FOXP2, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, ESRRA, STAT5B, KMT2A, TBL1XR1, KLF8, GRHL2, ZBTB14, SMARCA5, NFIL3, THAP11, EZH2phosphoT487, SOX13, AFF4, ZNF770, ZNF513, ZNF18, SP3, ARNT, NFIB, DAXX, BACH1, ZNF48, ZEB2, NFYA, ETV6, NCAPH2, MAFB, PBX3, HMGXB4, TEAD3, ZXDB, ZNF680, U2AF1, TAF7, KLF9, USF1, BCL11A, TFAP2A, SP1, ZNF479, ATF7, ASH2L, CTBP2, GLIS2, SMC3, STAG1, MLLT1, ZNF394, TRP47, AGO1, MTA3, ESR2, ZNF580, ZKSCAN1, KDM1A, BRG1, ZIC2, PCGF1, GATA3, KLF15, TAL1, NRIP1, ZNF143, MTA1, AGO2, CBX2, TP53, ZNF334, NFKB1, ZSCAN22, BRD2, PHF5A, KAT8, ARRB1, TBX21, EGR1, RB1, TFIIIC, RNF2, BRD4, JUND, CUX1, ZSCAN23, PGR, CBX5, PATZ1, RING1B, UBTF, TFAP4, BMI1, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, ZNF217, ESR1, SAP30, ZNF524, KLF1, SOX9, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, KDM4C, ZSCAN5A, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, ETS1, MYC, ZNF24, KLF12, NKX2-1, GABPA, MCRS1, STAT3, IKZF1, ZNF343, INO80, DNMT3B, SRSF3, EZH2, ZNF652, MRTFA, PHF8, SPI1, ZNF202, PCBP1, HDAC2, INTS13, GATAD2B, NCOA2, NFYB, ZNF76, ETV5, BCL6, SIN3A, ZBTB12, ZFP37, ERG3, CREBBP, ZNF384, RARA, ZNF35, TAF15, NFYC, SMAD4, CDK8, CSNK2A1, ZEB1, SREBF2, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, HOXA9, BCOR, FOXP1, AATF, NCOR2, CXXC4, PPARG, TBL1X, HDAC6, ZNF692, GTF2B, FOXO3, RELA, TARDBP, SKIL, MAX, ZNF592, GFI1B, NR2F1, TCF7L2, KDM5B, PKNOX1, MYOD1, AR, ZNF324, HEXIM1, DMAP1, AHR, MBD3, FOSL2, ZNF391, HMG20A, HMGN3, SUZ12, RBFOX2, ZFHX2, SFMBT1, INSM2, NFIC, CTCFL, KLF14, MECOM, ZNF736, CDX2, ZNF629, KLF5, TRIM28, ETV1, RCOR2, USF2, TCF12, BAF155, EP300, GATA6, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, CDK7, ID3, RUNX1T1, GATAD1, ARID3A, USP7, ASCL1, ZNF341, RAD21, GRHL3, XRCC5, ZNF614, NFE2, ZNF639, ARNTL, ZNF750, TRPS1, TFE3, HBP1, IRF1, SREBF1, ZGPAT, MRTFB, ATF1, PTBP1, CBX1, SMC1A, SIRT6, ZNF335, ZFX, FIP1L1, ZNF534, SMAD3, CBX8, TWIST1, NOTCH1, RUNX2, CDK6, GATA4, OSR2, GR, ZSCAN30, ZNF184, NRF1, PBX4, CHD1, FOS, SUPT5H, MED1, KDM6B, MYB, SCRT2, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, ZBTB7A, CCNT2, PHIP, TCF3, SKI, NELFA, FOXA2, RBBP5, ZNF600, MIER2, CDK9, HOXB13, YY1, ASXL1, ZNF610, SP140, HIF1A, OTX2, ZNF449, GATA1, CEBPG, SP7, NCOA3, NR2F2, ZNF687, ZNF843, BHLHE40, NFKBIZ, TAF1, ZNF579, ZBTB40, ZBTB42, NOTCH3, CLOCK, MAZ, BRCA1
- Target gene symbol (double-evidenced CRMs): MORC3,DOP1B,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 16
- Related genes and loops
- Related gene:
ENSG00000142197,
ENSG00000159256,
ENSG00000159259,
- Related loop:
chr21:36150000-36175000~~chr21:36300000-36325000,
chr21:36150000-36175000~~chr21:36325000-36350000,
chr21:36150000-36175000~~chr21:36375000-36400000,
chr21:36150000-36175000~~chr21:39175000-39200000,
chr21:36150000-36175000~~chr21:46175000-46200000,
chr21:36152011-36154258~~chr21:36208885-36210840,
chr21:36152011-36154258~~chr21:36329911-36331790,
chr21:36152043-36154290~~chr21:36208880-36210854,
chr21:36152093-36154114~~chr21:36208893-36211062,
chr21:36152093-36154114~~chr21:36329968-36331810,
chr21:36152185-36154228~~chr21:36208896-36210870,
chr21:36152185-36154228~~chr21:36330105-36331857,
chr21:36152191-36154260~~chr21:36208896-36210832,
chr21:36152213-36154154~~chr21:36208928-36210883,
chr21:36152221-36154080~~chr21:36208180-36210735,
chr21:36152221-36154286~~chr21:36388878-36390620,
chr21:36152227-36154127~~chr21:36208825-36210883,
chr21:36152227-36154127~~chr21:36329998-36331844,
chr21:36152242-36154206~~chr21:36208896-36211059,
chr21:36152242-36154206~~chr21:36329784-36332238,
chr21:36152248-36154218~~chr21:36329821-36332549,
chr21:36152248-36154218~~chr21:36389196-36390710,
chr21:36152248-36154241~~chr21:36187568-36189319,
chr21:36152248-36154241~~chr21:36208696-36210781,
chr21:36152259-36154196~~chr21:36208897-36210863,
chr21:36152272-36154246~~chr21:36208777-36210982,
chr21:36152272-36154246~~chr21:36329803-36332227,
chr21:36152278-36154206~~chr21:36329776-36331881,
chr21:36152287-36154113~~chr21:36330219-36331784,
chr21:36152322-36154109~~chr21:36208843-36210788,
chr21:36152382-36154180~~chr21:36208778-36210979,
chr21:36152382-36154180~~chr21:36330054-36331815,
chr21:36152388-36154122~~chr21:36329820-36331841,
chr21:36152395-36154141~~chr21:36208770-36210834,
chr21:36152396-36154049~~chr21:36208182-36211280,
chr21:36152411-36154050~~chr21:36330018-36331884,
chr21:36152478-36153914~~chr21:36329788-36331839,
chr21:36152486-36154104~~chr21:36208903-36211039,
chr21:36152494-36154153~~chr21:36208813-36210759,
chr21:36152499-36154054~~chr21:36329509-36332676,
chr21:36152513-36154017~~chr21:36208784-36210767,
chr21:36152523-36154340~~chr21:36330014-36331898,
chr21:36155171-36156841~~chr21:36208778-36210979,
chr21:36155462-36156722~~chr21:36208903-36211039,
chr21:36155654-36157667~~chr21:36208890-36210845,
chr21:36155654-36157667~~chr21:36259462-36261497,