- Basic information
- CohesinDB ID: CDBP00418346
- Locus: chr21-36169044-36170570
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Data sourse: ENCSR000BLD, ENCSR000BTU, GSE67783, GSE72082, GSE86191, GSE98367, GSE110061, ENCSR000BLS, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE120943, ENCSR153HNT, GSE25021, GSE126755
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Cell type: H1-hESC, Fibroblast, HCT-116, Monocytes, Hep-G2, Ishikawa, K-562, Neutrophil, HSPC, Macrophage, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 51%,
"4_Tx": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: JUN, RXRA
- Target gene symbol (double-evidenced CRMs): MORC3,DOP1B,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000142197,
ENSG00000159256,
ENSG00000159259,
- Related loop:
chr21:36075000-36100000~~chr21:36175000-36200000,
chr21:36150000-36175000~~chr21:36300000-36325000,
chr21:36150000-36175000~~chr21:36325000-36350000,
chr21:36150000-36175000~~chr21:36375000-36400000,
chr21:36150000-36175000~~chr21:39175000-39200000,
chr21:36150000-36175000~~chr21:46175000-46200000,
chr21:36175000-36200000~~chr21:36350000-36375000,
chr21:36175000-36200000~~chr21:36575000-36600000,