Deatailed information for cohesin site CDBP00418364
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00418364
- Locus: chr21-36220646-36222170
- Data sourse: GSE67783, ENCSR153HNT, GSE86191
- Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 61%,
"4_Tx": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: RARA, PAX8, TEAD3, APC, ZFX, DUX4, ZSCAN5A, WT1, FOXA1, SMAD4, ZNF770, DDX5, CTCF, AHR
- Target gene symbol (double-evidenced CRMs): CBR1,MORC3,CHAF1B,DOP1B,SETD4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000185917, ENSG00000159228, ENSG00000142197, ENSG00000159256, ENSG00000159259,
- Related loop: chr21:34350000-34375000~~chr21:36225000-36250000, chr21:36050000-36075000~~chr21:36200000-36225000, chr21:36125000-36150000~~chr21:36225000-36250000, chr21:36200000-36225000~~chr21:36325000-36350000, chr21:36200000-36225000~~chr21:36350000-36375000, chr21:36200000-36225000~~chr21:36375000-36400000, chr21:36225000-36250000~~chr21:36325000-36350000,
Tools:
- Assay
