Deatailed information for cohesin site CDBP00418365
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00418365
- Locus: chr21-36224193-36224492
- Data sourse: GSE67783
- Cell type: HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 53%,
"4_Tx": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZFX, XBP1, ZSCAN5A, FOXA1, ZNF770, CBX8, SUZ12, HOXB13, ZNF549, ERG, RELA, ZNF585B, ZNF384, NEUROD1, ZNF341, CDK6, ZFP64, OSR2, OTX2, ZNF143, MED1, KLF5, EZH2, TBX5, CTCF, BAF155, KLF1, AR, IRF1, RNF2, BRD4, FOXP1, CLOCK, EED
- Target gene symbol (double-evidenced CRMs): MORC3,SETD4,CHAF1B,CBR1,DOP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene: ENSG00000185917, ENSG00000159228, ENSG00000142197, ENSG00000159256, ENSG00000159259,
- Related loop: chr21:34350000-34375000~~chr21:36225000-36250000, chr21:36050000-36075000~~chr21:36200000-36225000, chr21:36125000-36150000~~chr21:36225000-36250000, chr21:36200000-36225000~~chr21:36325000-36350000, chr21:36200000-36225000~~chr21:36350000-36375000, chr21:36200000-36225000~~chr21:36375000-36400000, chr21:36225000-36250000~~chr21:36325000-36350000,
Tools:
- Assay
