- Basic information
- CohesinDB ID: CDBP00418385
- Locus: chr21-36262223-36263216
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Data sourse: GSE67783, GSE111913, ShirahigeLab, ShirahigeLab-NatGen2015, ENCSR153HNT, GSE116344
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Cell type: RPE, Fibroblast, RH4, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 51%,
"4_Tx": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CHD8, TOP2A, ZFX, XBP1, MYC, ARNT, GRHL3, NKX2-1, GABPA, ETV6, ZNF143, ESR1, ZNF334, CTCF, SPI1, AR, ZBTB26, NOTCH3, BRD4, BCOR, E2F1, SMC3, STAG1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): CHAF1B,DOP1B,MORC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 2
- Related genes and loops