Deatailed information for cohesin site CDBP00418386
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00418386
- Locus: chr21-36265080-36265691
- Data sourse: GSE67783, GSE86191
- Cell type: HCT-116, HSPC
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 51%,
"4_Tx": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: GLIS1, TRP47, MYCN, POU5F1, TOP2A, ZFX, XBP1, ZSCAN16, ZBTB48, WT1, ERG3, DDX5, PBX2, YY1, RELA, NEUROD1, MYC, RUNX2, CDK6, SP140, TCF4, BHLHE22, GABPA, MAX, GATA1, DNMT3B, NCOA3, EZH2, PKNOX1, GRHL2, MYOD1, CTCF, JUN, BCL11A, AR, BRD4, MAZ
- Target gene symbol (double-evidenced CRMs): DOP1B,CHAF1B,MORC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene: ENSG00000142197, ENSG00000159256, ENSG00000159259,
- Related loop: chr21:36155654-36157667~~chr21:36259462-36261497, chr21:36250000-36275000~~chr21:36350000-36375000, chr21:36250000-36275000~~chr21:36375000-36400000, chr21:36250000-36275000~~chr21:36550000-36575000, chr21:36259462-36261497~~chr21:36319312-36322600,
Tools:
- Assay
