Deatailed information for cohesin site CDBP00418387
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- Basic information
- CohesinDB ID: CDBP00418387
- Locus: chr21-36267726-36268314
- Data sourse: ENCSR167MTG, GSE206145-GSE177045, GSE72082, ENCSR000BLS, ENCSR054FKH, GSE68388, GSE73207, GSE115602
- Cell type: MCF-7, TF-1, HuCC-T1, Hep-G2
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,Mau2,SMC3
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 66%,
"15_Quies": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: GATA6, SKI, HNF4A, RUNX2, GATA4, LMO2, ARNT, ESR1, TCF3, GATA3, GRHL2, GATA1, AHR, LMO1
- Target gene symbol (double-evidenced CRMs): MORC3,DOP1B,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
Tools:
- Assay
