- Basic information
- CohesinDB ID: CDBP00418389
- Locus: chr21-36270588-36270906
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Data sourse: GSE206145, GSE86191
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Cell type: RPE, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 74%,
"15_Quies": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX2, BCL11A, ZFX, SP140, FLI1, XBP1, WT1, TP73, ZBTB48, BRD4, CTCF, GABPA, ZNF770, GATA3, NKX2-1, TP63, GATA1, SPI1, ZNF316
- Target gene symbol (double-evidenced CRMs): CHAF1B,MORC3,DOP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops