- Basic information
- CohesinDB ID: CDBP00418390
- Locus: chr21-36271142-36271832
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Data sourse: ENCSR230ZWH, GSE111913, ENCSR153HNT, ENCSR917QNE
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Cell type: K-562, Liver, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 63%,
"4_Tx": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZFX, ZSCAN16, ZSCAN5A, FOXA1, ERG3, ERG2, RELA, ZNF384, NEUROD1, RAD21, RXRA, OTX2, TP63, MED1, VDR, ZNF750, ESR1, EGR2, ZNF22, JUN, BAF155, SP1, ZNF664, HNF4A, AR, JUND
- Target gene symbol (double-evidenced CRMs): MORC3,DOP1B,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops