Deatailed information for cohesin site CDBP00418390


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  • Basic information
  • CohesinDB ID: CDBP00418390
  • Locus: chr21-36271142-36271832
  • Data sourse: ENCSR230ZWH, GSE111913, ENCSR153HNT, ENCSR917QNE
  • Cell type: K-562, Liver, RT-112
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.967
  • Subunit: SA1,Rad21,SMC1
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: non-Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 89% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "5_TxWk": 63%, "4_Tx": 21%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: ZFX, ZSCAN16, ZSCAN5A, FOXA1, ERG3, ERG2, RELA, ZNF384, NEUROD1, RAD21, RXRA, OTX2, TP63, MED1, VDR, ZNF750, ESR1, EGR2, ZNF22, JUN, BAF155, SP1, ZNF664, HNF4A, AR, JUND
  • Target gene symbol (double-evidenced CRMs): MORC3,DOP1B,CHAF1B
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 6
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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