- Basic information
- CohesinDB ID: CDBP00418398
- Locus: chr21-36284077-36285932
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Data sourse: GSE67783, GSE86191, GSE206145, GSE62063, GSE116344
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Cell type: RPE, RH4, HCT-116, HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 78%,
"15_Quies": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPB, MYC, SCRT2, SNAI2, RNF2, XBP1, BRD4, SCRT1, FOXA1, GABPA, ZNF652, ZNF22, CTCF, BCL11A, ERG
- Target gene symbol (double-evidenced CRMs): SMIM11A,DOP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops