- Basic information
- CohesinDB ID: CDBP00418399
- Locus: chr21-36286346-36287760
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Data sourse: GSE67783, GSE72082, GSE86191, GSE129526, GSE111913, ENCSR000BLS, GSE206145-NatGen2015, ENCSR153HNT, GSE116344, GSE25021
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Cell type: MCF-7, Fibroblast, HCT-116, RH4, Hep-G2, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 73%,
"4_Tx": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, CBX5, ZNF391, SOX2, NME2, XBP1, FOXA1, TSC22D4, HDGF, ATF3, BMI1, NFIC, RUNX3, PRDM1, CHD7, CBFB, ZNF189, PAX5, ZSCAN4, MITF, BACH2, ZNF467, MYOG, MAF, ZNF121, BCLAF1, TRIM28, NFE2L2, ESR1, OCA2, USF2, ZNF561, CTCF, SND1, TCF12, EP300, ZNF260, DPF2, PRDM4, IRF4, RAD51, ZNF776, ZNF528, TEAD4, RBPJ, EED, TFAP2C, GLIS1, POU2F2, CHD8, MYCN, POU5F1, TOP2A, ZNF239, ZSCAN21, ZBTB17, ZBTB48, MTA2, SRF, NBN, ARID3A, SP4, ERG, ASCL1, NFKB2, MYC, SMARCA4, TSHZ1, FOXP2, GRHL3, RXRA, GABPA, STAT3, ZNF8, SOX10, IKZF1, RCOR1, CD74, NR3C1, CEBPB, STAT5B, KMT2A, CREB1, FEZF1, SPI1, IRF1, GATA2, SIX2, HCFC1, MXI1, ZNF766, RELB, ZNF554, ATF1, RUNX1, SMC1A, BCL6, SIN3A, ZFX, AFF4, ZNF335, POU4F2, SMAD3, CBX8, TRIM22, ZNF18, PRDM10, ZNF792, MEF2A, ZBTB2, ZNF384, ZNF35, RUNX2, CDK6, GATA4, OSR2, ZNF184, ARNT, ATF2, ZEB2, ETV6, FOXM1, PBX3, FOS, CDK8, MED1, TERF1, PML, MYB, ZXDB, ZMYM3, SMAD1, KLF9, C11orf30, SETDB1, STAT5A, MAFK, NIPBL, BCL11A, SP1, REST, ATF7, ASH2L, PHIP, TCF3, FOXP1, BCOR, PRDM6, SMC3, NCOR2, STAG1, MLLT1, NFATC3, MEF2B, FOXA2, MTA3, CREM, EBF1, ZNF207, ZNF600, ZSCAN16, GTF2B, ZNF30, ZNF692, ZBED1, TCF7, CDK9, HOXB13, ZNF580, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, NEUROD1, MCM3, SP140, ZFP36, SKIL, TCF4, ZNF610, OTX2, GATA3, BHLHE22, BATF, HIF1A, MAX, ZNF143, GATA1, BCL11B, NR2F1, NEUROG2, KDM5B, TP53, PKNOX1, NFKB1, MYOD1, BRD2, TBX21, BHLHE40, AR, PAX3-FOXO1, ZNF324, ZBTB42, HEXIM1, RB1, RNF2, IKZF2, BRD4, JUND, SCRT1, NCOR1, MAZ, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): DOP1B,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops