- Basic information
- CohesinDB ID: CDBP00418407
- Locus: chr21-36303173-36303417
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): RUNX1,CBR3,DOP1B,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159216,
ENSG00000159231,
ENSG00000142197,
- Related loop:
chr21:27500000-27525000~~chr21:36275000-36300000,
chr21:34350000-34375000~~chr21:36275000-36300000,
chr21:34350000-34375000~~chr21:36300000-36325000,
chr21:35025000-35050000~~chr21:36300000-36325000,
chr21:36125000-36150000~~chr21:36300000-36325000,
chr21:36150000-36175000~~chr21:36300000-36325000,
chr21:36300000-36325000~~chr21:39175000-39200000,