- Basic information
- CohesinDB ID: CDBP00418409
- Locus: chr21-36308895-36312325
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Data sourse: ENCSR000DZP, GSE67783, GSE86191, GSE206145-NatGen2015, GSE62063, ENCSR000BMY, ENCSR153HNT, GSE50893
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Cell type: GM12892, GM2630, Fibroblast, HCT-116, GM2610, GM12878, K-562, HSPC, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 78%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF426, ZNF697, FOXA1, HDGF, NFIC, ZFP64, RUNX3, CBFB, PAX5, BACH2, MAF, ELF1, TRIM28, BCLAF1, OCA2, USF2, CTCF, ZNF577, TCF12, EP300, LMO1, DPF2, IRF4, CREB3, ZNF555, RBPJ, EED, POU2F2, ZBTB48, ZSCAN5A, NBN, ARID3A, ERG, OGG1, ZBTB8A, ZNF597, MYC, MCM5, RAD21, BATF3, GABPA, CD74, STAT5B, KMT2A, ZBTB11, CREB1, SPI1, HCFC1, SMARCA5, RELB, BCL6, ZFX, TRIM22, MEF2A, ZBTB2, ZNF384, NOTCH1, ARNT, NRF1, ZNF781, ATF2, HMBOX1, ZNF518A, FOXM1, ETV6, NR2C1, MED1, ZEB1, ZNF558, MYB, ZNF41, MAFK, BCL11A, SP1, REST, ATF7, BCOR, TCF3, FOXP1, ZNF623, NCOR2, ZNF34, MLLT1, ZNF394, NFATC3, MEF2B, MTA3, CREM, EBF1, NFATC1, ZBED1, WT1, GTF2B, ZBTB33, HOXB13, BCL3, YY1, RELA, TARDBP, JUNB, MCM3, SP140, HIF1A, SKIL, GATA3, BATF, TP53, ZNF213, ZNF687, TBX21, BHLHE40, AR, BRD4
- Target gene symbol (double-evidenced CRMs): RUNX1,DOP1B,CBR3,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 22
- Related genes and loops