- Basic information
- CohesinDB ID: CDBP00418422
- Locus: chr21-36340657-36340869
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 72%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, ZSCAN5D, EBF1, ZFX, GTF2B, ZBTB48, FOXA1, ZBTB33, HOXB13, ERG, YY1, ZNF384, SMARCA4, SP140, GRHL3, HIF1A, GABPA, SUPT5H, MITF, CREB1, PIAS1, SNAI2, ESR1, FEZF1, CTCF, RBM22, BAF155, AR, GATA2, EGR1, SMARCA5, FOXP1, NCOR2, TFAP2C
- Target gene symbol (double-evidenced CRMs): SMIM11A,DOP1B,MORC3,CBR3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops