- Basic information
- CohesinDB ID: CDBP00418424
- Locus: chr21-36345238-36346750
-
Data sourse: GSE67783, GSE120943, ENCSR153HNT, GSE86191
-
Cell type: K-562, Monocytes, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"4_Tx": 71%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, PGR, SOX2, XBP1, FOXA1, HNRNPK, TFAP4, HDGF, ATF3, ZFP64, PRDM1, CBFB, ZNF189, ZNF320, ZNF467, ZNF629, TEAD1, BCLAF1, ZNF121, SNAI2, ESR1, CTCF, JUN, BAF155, TFAP2C, NANOG, CHD8, ZNF317, ZBTB17, ZBTB48, DDX5, ERG, ASCL1, ETS1, MYC, GABPA, NKX3-1, DNMT3B, NR3C1, ESRRA, CREB1, SPI1, PCBP1, HDAC2, GATA2, SMC1A, SIN3A, ZFX, SMAD3, PCBP2, ZNF770, ERG3, CREBBP, ZNF35, ZNF384, RUNX2, CDK6, GATA4, PBX4, ATF2, ZEB2, PBX3, SUPT5H, CHD1, FOS, PIAS1, ZNF22, RBM22, BCL11A, TFAP2A, ARID1A, POU2F3, ATF7, ASH2L, CTBP2, FOXP1, PRDM6, STAG1, FOXA2, ZNF600, ZNF692, WT1, ZNF30, HOXB13, RELA, JUNB, GATA3, MAX, AGO2, TLE3, NR2F2, AR, TAF1, ZBTB42, BRD4, JUND, SCRT1, FOSL2
- Target gene symbol (double-evidenced CRMs): CBR3,DOP1B,MORC3,SMIM11A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159231,
ENSG00000142197,
ENSG00000159256,
- Related loop:
chr21:33550000-33575000~~chr21:36350000-36375000,
chr21:34350000-34375000~~chr21:36325000-36350000,
chr21:36125000-36150000~~chr21:36325000-36350000,
chr21:36125000-36150000~~chr21:36350000-36375000,
chr21:36150000-36175000~~chr21:36325000-36350000,
chr21:36175000-36200000~~chr21:36350000-36375000,
chr21:36200000-36225000~~chr21:36325000-36350000,
chr21:36200000-36225000~~chr21:36350000-36375000,
chr21:36225000-36250000~~chr21:36325000-36350000,
chr21:36250000-36275000~~chr21:36350000-36375000,