- Basic information
- CohesinDB ID: CDBP00418428
- Locus: chr21-36353043-36353476
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 58%,
"4_Tx": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SOX2, FOXA1, ZNF362, ZBTB44, IKZF3, MITF, ZNF629, KLF5, TEAD1, KLF10, ZNF561, CTCF, JUN, BAF155, ZNF528, ZNF175, GLIS1, NANOG, CDK7, ZNF778, TOP2A, CTBP1, ZBTB17, ZBTB48, ZSCAN5A, DDX5, BAHD1, ERG, ZBTB8A, ZNF341, MYC, SMARCA4, GRHL3, GABPA, SOX10, NKX3-1, NR3C1, CREB1, FEZF1, GRHL2, SPI1, IRF1, GATA2, SMC1A, NKX2-2, ZFX, ZNF770, ZNF18, ZNF35, ZNF384, ZSCAN30, GATA4, OSR2, ARNT, ZEB2, ZNF10, SUPT5H, MED1, ZXDB, SCRT2, PIAS1, RBM22, BCL11A, ARID1A, GLI2, HOXA9, PHIP, FOXP1, PRDM6, ZNF34, FOXA2, PAF1, ZSCAN16, HOXB13, ZNF580, YY1, RELA, BRG1, SP140, ZIC2, OTX2, TLE3, BCL11B, SP7, TCF7L2, PKNOX1, ZNF213, ZSCAN22, BCL6B, ZNF843, AR, ZBTB42, ZBTB26, NCOR1, BRD4, SCRT1, ZZZ3
- Target gene symbol (double-evidenced CRMs): MORC3,CBR3,DOP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159231,
ENSG00000142197,
ENSG00000159256,
- Related loop:
chr21:33550000-33575000~~chr21:36350000-36375000,
chr21:34350000-34375000~~chr21:36325000-36350000,
chr21:36125000-36150000~~chr21:36325000-36350000,
chr21:36125000-36150000~~chr21:36350000-36375000,
chr21:36150000-36175000~~chr21:36325000-36350000,
chr21:36175000-36200000~~chr21:36350000-36375000,
chr21:36200000-36225000~~chr21:36325000-36350000,
chr21:36200000-36225000~~chr21:36350000-36375000,
chr21:36225000-36250000~~chr21:36325000-36350000,
chr21:36250000-36275000~~chr21:36350000-36375000,