- Basic information
- CohesinDB ID: CDBP00418431
- Locus: chr21-36360808-36361089
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Data sourse: ShirahigeLab, ENCSR153HNT
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Cell type: K-562, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 79%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, CHD8, PPARG, CEBPA, GTF2B, DDX5, PRDM10, ERG, MYC, ARNT, ATF2, ZNF143, SUPT5H, CEBPG, CEBPB, ZNF121, ZNF334, RBM22, SPI1, AR, RBM25, CLOCK, FOXP1, ZIM3, ZZZ3, AHR
- Target gene symbol (double-evidenced CRMs): CBR3,MORC3,DOP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops