- Basic information
- CohesinDB ID: CDBP00418435
- Locus: chr21-36374655-36374977
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 70%,
"5_TxWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, NANOG, CEBPA, FOXA2, TOP2A, SOX2, ZFX, ZBTB17, WT1, ZSCAN5A, ZBTB48, FOXA1, LEO1, HOXB13, ERG, RELA, MYC, GATA4, SMARCA4, SP140, GATA3, NKX3-1, SUPT5H, CDK8, VDR, TLE3, CDX2, JMJD1C, CEBPB, STAT5B, CREB1, PIAS1, ESR1, CTCF, RBM22, PHF5A, SPI1, BAF155, AR, GATA2, BRD4, FOXP1, MAZ, PRDM6, HEXIM1-CDK9, SMC3, ZZZ3
- Target gene symbol (double-evidenced CRMs): MORC3,DOP1B,CBR3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159231,
ENSG00000142197,
ENSG00000159256,
- Related loop:
chr21:33550000-33575000~~chr21:36350000-36375000,
chr21:34350000-34375000~~chr21:36375000-36400000,
chr21:36125000-36150000~~chr21:36350000-36375000,
chr21:36125000-36150000~~chr21:36375000-36400000,
chr21:36150000-36175000~~chr21:36375000-36400000,
chr21:36175000-36200000~~chr21:36350000-36375000,
chr21:36200000-36225000~~chr21:36350000-36375000,
chr21:36200000-36225000~~chr21:36375000-36400000,
chr21:36250000-36275000~~chr21:36350000-36375000,
chr21:36250000-36275000~~chr21:36375000-36400000,