- Basic information
- CohesinDB ID: CDBP00418436
- Locus: chr21-36379872-36380326
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Data sourse: GSE116344, GSE67783
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Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 93%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, NME2, XBP1, FOXA1, LEO1, ZFHX2, ATF3, ZFP64, ZNF362, ZNF189, SMARCE1, BACH2, CDX2, ZNF629, ZNF121, TRIM28, NFE2L2, LMO2, ESR1, OCA2, HNF1B, CTCF, JUN, BAF155, PAX8, DPF2, IRF4, SOX6, PDX1, EED, GLIS1, POU2F2, ZBTB17, ZBTB48, ZSCAN5A, DDX5, ERG, HOXC5, MYC, ONECUT1, SMARCA4, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, SOX10, NFE2, ZNF639, NR3C1, CEBPB, EZH2, KLF8, GRHL2, NFE2L1, ZHX2, IRF1, GATA2, FLI1, MAFG, ZFX, SMAD3, ZNF770, SMARCC1, PRDM10, CREBBP, ZNF384, ARNT, NRF1, PBX4, BACH1, SUPT5H, CDK8, FOS, TEAD3, PML, TERF1, ZEB1, SCRT2, ZNF331, PIAS1, C11orf30, ZNF22, RBM22, MAFK, SP1, HNF4A, ASH2L, NFATC3, PPARG, FOXA2, PAF1, E2F8, ZNF600, ZSCAN16, WT1, MAFF, ZBTB33, KDM1A, RELA, NEUROD1, JUNB, SP140, HIF1A, OTX2, MAX, NRIP1, ZNF143, AGO2, GATA1, ZFP69B, SP7, KDM5B, TP53, ZNF140, ELF3, AR, ZBTB40, ZNF324, EGLN2, EGR1, MYNN, NCOR1, BRD4, ILF3, SCRT1, JUND, MAZ, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): DOP1B,MORC3,SMIM11A,CBR3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159231,
ENSG00000142197,
ENSG00000159256,
- Related loop:
chr21:33550000-33575000~~chr21:36350000-36375000,
chr21:34350000-34375000~~chr21:36375000-36400000,
chr21:36125000-36150000~~chr21:36350000-36375000,
chr21:36125000-36150000~~chr21:36375000-36400000,
chr21:36150000-36175000~~chr21:36375000-36400000,
chr21:36175000-36200000~~chr21:36350000-36375000,
chr21:36200000-36225000~~chr21:36350000-36375000,
chr21:36200000-36225000~~chr21:36375000-36400000,
chr21:36250000-36275000~~chr21:36350000-36375000,
chr21:36250000-36275000~~chr21:36375000-36400000,