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Basic information

CohesinDB ID: CDBP00418443

Locus: chr21-36396999-36397241

Data sourse: ENCSR153HNT, ENCSR000BKV

Cell type: K-562

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 59%, "4_Tx": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, MTA3, ZNF263, MYCN, ZFX, CTBP1, XBP1, MEIS2, ZBTB48, ERG3, PBX2, SP4, ZKSCAN1, ERG, YY1, RELA, ZBTB2, ZNF384, HDGF, NEUROD1, SMARCA4, ZNF362, EOMES, GABPA, SMARCE1, MAX, SUPT5H, MTA1, IKZF1, GATA1, ZNF143, CEBPB, NCOA3, RBM39, ZNF331, EZH2, LMO2, OCA2, L3MBTL2, ZNF22, T, CTCF, SPI1, NIPBL, BCL11A, MNT, AR, DPF2, HDAC2, TRIM24, BRD4, SMARCA5, BCOR, ILF3, JUND, ZNF528, MAZ, HEXIM1-CDK9, EED

Target gene symbol (double-evidenced CRMs): DOP1B,SMIM11A,CBR3,CHAF1B

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000205670, ENSG00000159231, ENSG00000142197, ENSG00000159259,

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Deatailed information for cohesin site CDBP00418443