- Basic information
- CohesinDB ID: CDBP00418448
- Locus: chr21-36408129-36408499
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Data sourse: GSE67783, ENCSR153HNT, GSE68388
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Cell type: K-562, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 69%,
"4_Tx": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, PGR, CHD8, ZSCAN5D, ZFX, XBP1, SMAD3, ZBTB48, FOXA1, ZNF770, LEO1, SMARCC1, YY1, RELA, ZNF341, MYC, GR, GATA3, STAT3, TAL1, SUPT5H, MITF, NR3C1, CEBPB, ELF1, KDM5B, LMO2, ESR1, TP53, ELF3, CTCF, AR, FLI1, BRD4, SCRT1, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): CHAF1B,HLCS,SMIM11A,SIM2,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159259,
ENSG00000159263,
ENSG00000159267,
ENSG00000182670,
- Related loop:
chr21:34350000-34375000~~chr21:36400000-36425000,
chr21:36400000-36425000~~chr21:36500000-36525000,
chr21:36400000-36425000~~chr21:36575000-36600000,
chr21:36400000-36425000~~chr21:36600000-36625000,
chr21:36400000-36425000~~chr21:36625000-36650000,
chr21:36400000-36425000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36700000-36725000,
chr21:36400000-36425000~~chr21:36850000-36875000,
chr21:36400000-36425000~~chr21:36900000-36925000,
chr21:36400000-36425000~~chr21:36925000-36950000,
chr21:36400000-36425000~~chr21:37075000-37100000,