- Basic information
- CohesinDB ID: CDBP00418453
- Locus: chr21-36415497-36416503
-
Data sourse: GSE206145, GSE67783, GSE86191
-
Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 54%,
"4_Tx": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GLIS1, NANOG, MYCN, SOX2, ZFX, WT1, SMAD3, ZBTB48, FOXA1, DDX5, LEO1, SP4, YY1, ATF3, NFIC, SMAD2, EOMES, CHD7, SP140, ZIC2, SMAD4, MAX, ZNF10, GATA1, DNMT3B, CBX2, NR3C1, ZNF3, T, TCF12, CTCF, EP300, USF1, PAX8, HDAC2, GATA2, ZNF479, BRD4, FOXP1, MAZ, TEAD4, STAG1
- Target gene symbol (double-evidenced CRMs): HLCS,SMIM11A,SIM2,CHAF1B,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 29
- Number of somatic mutations (non-coding): 29
- Related genes and loops
- Related gene:
ENSG00000205670,
ENSG00000159259,
ENSG00000159263,
ENSG00000159267,
ENSG00000182670,
- Related loop:
chr21:34350000-34375000~~chr21:36400000-36425000,
chr21:36140808-36142792~~chr21:36419122-36421037,
chr21:36140824-36142795~~chr21:36419273-36421104,
chr21:36400000-36425000~~chr21:36500000-36525000,
chr21:36400000-36425000~~chr21:36575000-36600000,
chr21:36400000-36425000~~chr21:36600000-36625000,
chr21:36400000-36425000~~chr21:36625000-36650000,
chr21:36400000-36425000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36700000-36725000,
chr21:36400000-36425000~~chr21:36850000-36875000,
chr21:36400000-36425000~~chr21:36900000-36925000,
chr21:36400000-36425000~~chr21:36925000-36950000,
chr21:36400000-36425000~~chr21:37075000-37100000,
chr21:36418841-36421262~~chr21:36588530-36590785,
chr21:36418841-36421262~~chr21:36926465-36928856,
chr21:36418853-36423205~~chr21:36588271-36590801,
chr21:36419097-36421364~~chr21:36926664-36928827,
chr21:36419122-36421037~~chr21:36926683-36929117,
chr21:36419158-36421245~~chr21:36588474-36590657,
chr21:36419182-36421107~~chr21:36588390-36590623,
chr21:36419182-36421107~~chr21:36926687-36928814,
chr21:36419184-36421121~~chr21:36926717-36929094,
chr21:36419194-36421140~~chr21:36588734-36590540,
chr21:36419201-36421142~~chr21:36588485-36590701,
chr21:36419201-36421142~~chr21:36926513-36928814,
chr21:36419216-36421134~~chr21:36588498-36590583,
chr21:36419216-36421134~~chr21:36926710-36929115,
chr21:36419217-36421314~~chr21:36926678-36929090,
chr21:36419245-36420874~~chr21:36588511-36590472,
chr21:36419258-36420992~~chr21:36588860-36590466,
chr21:36419274-36420828~~chr21:36926717-36928685,
chr21:36419274-36421021~~chr21:36588675-36590309,
chr21:36419280-36421083~~chr21:36588665-36590475,
chr21:36419280-36421083~~chr21:36926505-36928808,
chr21:36419354-36421097~~chr21:36503272-36505466,
chr21:36419354-36421097~~chr21:36588498-36590567,
chr21:36419354-36421097~~chr21:36630022-36631930,
chr21:36419354-36421097~~chr21:36853698-36855512,
chr21:36419354-36421097~~chr21:36926649-36929131,
chr21:36419354-36421097~~chr21:36929169-36930348,
chr21:36419356-36420914~~chr21:36588710-36590304,
chr21:36419396-36420907~~chr21:36927027-36928493,
chr21:36419406-36420906~~chr21:36927009-36928504,
chr21:36419466-36420997~~chr21:36916786-36918422,
chr21:36419507-36420817~~chr21:36927023-36928663,
chr21:36421367-36423313~~chr21:36588390-36590623,
chr21:36421381-36423343~~chr21:36588528-36590557,
chr21:36421400-36423189~~chr21:36588493-36590531,
chr21:36421415-36423297~~chr21:36926465-36928856,
chr21:36421419-36423290~~chr21:36588485-36590701,
chr21:36421419-36423290~~chr21:36926513-36928814,
chr21:36421424-36423153~~chr21:36588511-36590472,
chr21:36421453-36423350~~chr21:36477710-36479878,
chr21:36421453-36423350~~chr21:36588498-36590567,
chr21:36421457-36423277~~chr21:36588417-36590557,
chr21:36421469-36423169~~chr21:36588501-36590672,