- Basic information
- CohesinDB ID: CDBP00418457
- Locus: chr21-36427097-36427532
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 47%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CEBPA, PAF1, ZFX, XBP1, DUX4, ZBTB48, WT1, PBX2, PRDM10, ERG, SP140, PRDM1, NKX2-1, CEBPB, ZEB1, ZNF121, ZMYM3, ZNF3, CTCF, SPI1, REST, HNRNPLL, BCOR, TCF3, MAZ, HCFC1R1, STAG1
- Target gene symbol (double-evidenced CRMs): KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000157551,
- Related loop:
chr21:34350000-34375000~~chr21:36400000-36425000,
chr21:36400000-36425000~~chr21:36500000-36525000,
chr21:36400000-36425000~~chr21:36575000-36600000,
chr21:36400000-36425000~~chr21:36600000-36625000,
chr21:36400000-36425000~~chr21:36625000-36650000,
chr21:36400000-36425000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36700000-36725000,
chr21:36400000-36425000~~chr21:36850000-36875000,
chr21:36400000-36425000~~chr21:36900000-36925000,
chr21:36400000-36425000~~chr21:36925000-36950000,
chr21:36400000-36425000~~chr21:37075000-37100000,
chr21:36418853-36423205~~chr21:36588271-36590801,
chr21:36421367-36423313~~chr21:36588390-36590623,
chr21:36421381-36423343~~chr21:36588528-36590557,
chr21:36421400-36423189~~chr21:36588493-36590531,
chr21:36421415-36423297~~chr21:36926465-36928856,
chr21:36421419-36423290~~chr21:36588485-36590701,
chr21:36421419-36423290~~chr21:36926513-36928814,
chr21:36421424-36423153~~chr21:36588511-36590472,
chr21:36421453-36423350~~chr21:36477710-36479878,
chr21:36421453-36423350~~chr21:36588498-36590567,
chr21:36421457-36423277~~chr21:36588417-36590557,
chr21:36421469-36423169~~chr21:36588501-36590672,
chr21:36421646-36423206~~chr21:36588699-36590235,
chr21:36421690-36423243~~chr21:36588716-36590491,
chr21:36421690-36423243~~chr21:36926866-36928715,
chr21:36421736-36423241~~chr21:36926885-36928641,
chr21:36421773-36423174~~chr21:36588574-36590548,
chr21:36425000-36450000~~chr21:36575000-36600000,
chr21:36425000-36450000~~chr21:38300000-38325000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:36429053-36431122~~chr21:36860258-36861974,
chr21:36429235-36431507~~chr21:36456350-36458004,
chr21:36429275-36431150~~chr21:36477549-36479573,
chr21:36429321-36431439~~chr21:36456106-36458114,
chr21:36429447-36431439~~chr21:36989316-36991217,