- Basic information
- CohesinDB ID: CDBP00418460
- Locus: chr21-36435084-36436691
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 55%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, FOXA1, SUZ12, PBX2, SMAD1-5, UBTF, HDGF, LYL1, ATF3, NFIC, ZNF362, ZBTB5, CHD7, RUNX3, MECOM, SMARCE1, PAX5, TP63, MITF, JMJD1C, TEAD1, TRIM28, ETV1, SNAI2, LMO2, USF2, JUN, TCF12, CTCF, EP300, GATA6, DPF2, TRIM24, SOX6, TEAD4, ZNF92, EED, POU2F2, CHD8, MYCN, TOP2A, RUNX1T1, CTBP1, MTA2, ZBTB17, ZBTB48, STAT1, SRF, DDX5, HOXC5, ERG, NFKB2, MYC, ONECUT1, EOMES, SMARCA4, ARID1B, RAD21, RXRA, NKX2-1, GABPA, STAT3, NKX3-1, IKZF1, RCOR1, NFE2, NR2F6, VDR, NR3C1, CEBPB, KMT2A, EBF3, ZHX2, SPI1, ZNF664, IRF1, HDAC2, GATA2, SMARCA5, RELB, ATF1, RUNX1, SMC1A, CEBPA, EZH2phosphoT487, LDB1, HDAC1, ZNF335, ZFX, SIN3A, SMAD3, PALB2, CBX8, ZMIZ1, ZNF18, RARA, ZNF384, RUNX2, SMAD2, GATA4, ARNT, PBX4, DAXX, ATF2, ZEB2, ETV6, CBFA2T3, FOXM1, PBX3, CDK8, FOS, CHD1, MED1, PML, CEBPD, MYB, ZMYM3, PIAS1, SMAD1, TBX5, SETDB1, EVI1, STAT5A, KLF16, USF1, SP1, NIPBL, BCL11A, NKX2-5, REST, ARID1A, ZBTB7A, RBM25, ATF7, PHIP, TCF3, SMC3, STAG1, ZNF394, SKI, CBFA2T2, FOXA2, CBX3, EBF1, CREM, CHD2, ZNF600, ZSCAN16, BCL3, ZNF318, KDM1A, YY1, RELA, ZKSCAN1, JUNB, NEUROD1, ZIC2, HIF1A, ZFP36, GATA3, BATF, TAL1, MAX, ZNF143, GATA1, MTA1, KLF4, NR2F2, ZNF512, NEUROG2, NR2F1, KDM5B, PKNOX1, NFKB1, MYOD1, T, ZFP28, BHLHE40, AR, ZBTB16, HEXIM1, RB1, ZNF280D, MYNN, RNF2, NCOR1, BRD4, JUND, MAZ, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops