- Basic information
- CohesinDB ID: CDBP00418461
- Locus: chr21-36437128-36438862
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Data sourse: ENCSR501LQA, ENCSR150EFU, ENCSR330ELC, GSE165895, ENCSR000EFJ, GSE67783, GSE138405, GSE76893, GSE101921, GSE206145-NatGen2015, ENCSR895JMI, ENCSR193NSH, GSE206145, ENCSR981FDC, ENCSR620NWG, ENCSR767DFK, ENCSR495WGO, ENCSR217ELF, ENCSR853VWZ, ENCSR000HPG, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR153HNT, ENCSR000EDE, GSE68388, GSE73207
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Cell type: RPE, Fibroblast, Hela-Kyoto, TF-1, A-549, HCAEC, HeLa-S3, RT-112, IMR-90, K-562, HSPC, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 12% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 53%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: WT1, ZSCAN16
- Target gene symbol (double-evidenced CRMs): KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops