- Basic information
- CohesinDB ID: CDBP00418462
- Locus: chr21-36439462-36440472
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE68388
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Cell type: K-562, Fibroblast, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, MYCN, ZFX, NME2, XBP1, DUX4, ZSCAN5A, CBX8, YY1, RELA, RUNX2, ZNF362, ZNF143, CBX2, CEBPB, MAF, NCOA3, KLF9, CTCF, ZFP28, SOX4, RNF2, NOTCH3, STAG1, EED
- Target gene symbol (double-evidenced CRMs): KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops