- Basic information
- CohesinDB ID: CDBP00418464
- Locus: chr21-36448377-36448761
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 75%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, TRP47, PGR, KLF13, PPARG, FOXA2, POU5F1, MYCN, TOP2A, SIN3A, ZFX, CTBP1, ZNF317, XBP1, ZBTB48, WT1, SOX2, ZSCAN5A, KDM4C, POU4F2, CBX8, SUZ12, ZNF770, PBX2, ERG, YY1, RELA, ZNF384, JUNB, EZH1, CDK6, GATA4, PRDM1, SP140, ARNT, ZFP36, GABPA, ZNF189, TAL1, XRCC5, SPIB, FOS, ZNF143, RCOR1, MITF, MED1, CBX2, NCOA3, KMT2A, CREB1, SNAI2, KLF10, CHD8, TP53, ESR1, KLF9, C11orf30, ZNF334, USF2, ZNF22, JUN, CTCF, SPI1, KLF1, LMO1, AR, GATA2, ZNF324, ZNF182, EGLN2, REST, FLI1, ZNF263, RNF2, BRD4, MAZ, SMC3, POU2F2, STAG1, EED
- Target gene symbol (double-evidenced CRMs): KCNJ15
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops