- Basic information
- CohesinDB ID: CDBP00418477
- Locus: chr21-36474757-36475796
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Data sourse: GSE67783, GSE86191, GSE72082, ENCSR000BLS, GSE206145, ENCSR153HNT
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Cell type: RPE, HCT-116, Hep-G2, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
89% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, PGR, HMG20A, ZSCAN5C, FOXA1, SUZ12, RXRB, ZFP64, MXD4, MITF, TEAD1, RCOR2, ESR1, USF2, CTCF, JUN, BAF155, SOX5, E2F6, FOXA3, GATAD2A, RBPJ, EED, CHD8, ZNF263, MYCN, ZBTB48, DDX5, SAP130, NFKB2, ETS1, MYC, RAD21, RXRA, NKX2-1, MCRS1, XRCC5, INO80, NR3C1, EZH2, BMPR1A, TFE3, ZNF644, DRAP1, ZGPAT, ZNF490, NFIL3, ZNF554, BCL6, CEBPA, SOX13, ZFX, POU4F2, CBX8, RARA, RUNX2, GATA4, ATF2, ZNF48, SMAD4, FOS, SMARCB1, TEAD3, USF1, SP1, HNF4A, ZBTB7A, ASH2L, STAG1, FOXA2, ZSCAN16, WT1, KDM1A, YY1, RELA, SP140, GATA3, TAL1, MAX, CBX2, ZFP69B, GFI1B, NR2F2, NFKB1, ELF3, BRD2, KAT8, NFKBIZ, AR, BHLHE40, PAX3-FOXO1, ZBTB26, RNF2, BRD4, MAZ
- Target gene symbol (double-evidenced CRMs): SIM2,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159263,
ENSG00000159267,
- Related loop:
chr21:36421453-36423350~~chr21:36477710-36479878,
chr21:36429275-36431150~~chr21:36477549-36479573,
chr21:36475000-36500000~~chr21:36575000-36600000,
chr21:36475000-36500000~~chr21:36725000-36750000,
chr21:36475000-36500000~~chr21:36900000-36925000,
chr21:36475000-36500000~~chr21:36925000-36950000,
chr21:36477778-36479875~~chr21:36490518-36492345,
chr21:36478462-36479768~~chr21:36588710-36590304,