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Basic information

CohesinDB ID: CDBP00418487

Locus: chr21-36494558-36495295

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 89% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 58%, "14_ReprPCWk": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: GLIS1, ZSCAN5D, ZNF263, ZFX, XBP1, WT1, ZBTB48, ZSCAN5A, ZNF770, CBX8, TET2, ERG3, ERG2, SMARCC1, ZFHX2, ERG, YY1, RELA, JUNB, BMI1, EZH1, SMARCA4, ZNF362, BRG1, CHD7, SP140, ZFP36, ARNT, ZIC2, HIF1A, ZNF48, MAX, ZNF143, MITF, ZNF320, CBX2, PLAG1, ZNF467, SRSF3, TEAD3, ZNF141, ELF1, TRIM28, LMO2, GRHL2, CTCF, JUN, USF1, BAF155, BCL11A, MNT, REST, E2F4, RNF2, ZNF548, MAZ, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): HLCS,SIM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000159263, ENSG00000159267,

eachgene

Deatailed information for cohesin site CDBP00418487