- Basic information
- CohesinDB ID: CDBP00418497
- Locus: chr21-36516886-36517136
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 48%,
"14_ReprPCWk": 45%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CBR3,SIM2,HLCS,KCNJ15,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159231,
ENSG00000159259,
ENSG00000159263,
ENSG00000159267,
ENSG00000157551,
- Related loop:
chr21:34350000-34375000~~chr21:36500000-36525000,
chr21:36125000-36150000~~chr21:36500000-36525000,
chr21:36400000-36425000~~chr21:36500000-36525000,
chr21:36500000-36525000~~chr21:36600000-36625000,
chr21:36500000-36525000~~chr21:36625000-36650000,
chr21:36500000-36525000~~chr21:36675000-36700000,
chr21:36500000-36525000~~chr21:36725000-36750000,
chr21:36500000-36525000~~chr21:36825000-36850000,
chr21:36500000-36525000~~chr21:36900000-36925000,
chr21:36500000-36525000~~chr21:36925000-36950000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38250000-38275000,
chr21:36500000-36525000~~chr21:38350000-38375000,