- Basic information
- CohesinDB ID: CDBP00418503
- Locus: chr21-36533052-36533397
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 52%,
"15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMC1A, ZNF263, MYCN, SS18, ZFX, POU4F2, XBP1, ZBTB48, WT1, TET2, SMARCC1, KDM1A, YY1, RELA, ATF3, MYC, BRG1, SMARCA4, CHD7, SP140, ARNT, GRHL3, HIF1A, ZNF143, ARNTL, TEAD1, CREB1, ZMYM3, EZH2, ESR1, OCA2, CTCF, BCL11A, GATA2, ZNF146, HSF1, BRD4, ZNF423, CLOCK, MAZ, HCFC1R1, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 3
- Related genes and loops