- Basic information
- CohesinDB ID: CDBP00418516
- Locus: chr21-36561221-36561615
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 47%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, CEBPA, ZSCAN5D, TOP2A, KDM4C, ZFX, XBP1, GTF2B, ZBTB48, ZSCAN5A, WT1, CBX8, ERG3, YY1, RELA, ARNT, HIF1A, PAX5, ZNF143, CBX2, CEBPG, CEBPB, NR3C1, PDX1, CEBPD, EZH2, BRD2, CTCF, AR, NOTCH3, BRD4, SMC3, STAG1, EED
- Target gene symbol (double-evidenced CRMs): DOP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops