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Basic information

CohesinDB ID: CDBP00418529

Locus: chr21-36597896-36598145

Data sourse: GSE206145-NatGen2015, GSE111913

Cell type: RT-112, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 92% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 52%, "15_Quies": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU5F1, SOX2, ZFX, XBP1, ZNF317, WT1, STAT1, FOXA1, CBX8, ZNF513, KDM1A, RELA, GRHL3, PRDM9, MAX, GATA1, ZNF736, CBX2, NR3C1, SP7, SNAI2, EZH2, KDM5B, OCA2, SETDB1, CTCF, SPI1, MNT, AR, RBM25

Target gene symbol (double-evidenced CRMs): SIM2,DOP1B,CBR3,CHAF1B,HLCS,KCNJ6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000159231, ENSG00000142197, ENSG00000159259, ENSG00000159263, ENSG00000159267, ENSG00000157542,

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Deatailed information for cohesin site CDBP00418529