- Basic information
- CohesinDB ID: CDBP00418530
- Locus: chr21-36600818-36601345
-
Data sourse: GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 41%,
"15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, JARID2, MYCN, SOX2, ZFX, NME2, WT1, ZSCAN5A, ZBTB48, TET2, CDK9, RELA, ATF3, MYC, SP140, PROX1, TAL1, TP63, CEBPB, EZH2, TP53, CTCF, KLF1, ZNF479, BRD4, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): CHAF1B,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000159259,
ENSG00000159267,
- Related loop:
chr21:36125000-36150000~~chr21:36575000-36600000,
chr21:36175000-36200000~~chr21:36575000-36600000,
chr21:36400000-36425000~~chr21:36575000-36600000,
chr21:36400000-36425000~~chr21:36600000-36625000,
chr21:36425000-36450000~~chr21:36575000-36600000,
chr21:36475000-36500000~~chr21:36575000-36600000,
chr21:36500000-36525000~~chr21:36600000-36625000,
chr21:36575000-36600000~~chr21:36675000-36700000,
chr21:36575000-36600000~~chr21:36725000-36750000,
chr21:36575000-36600000~~chr21:36850000-36875000,
chr21:36575000-36600000~~chr21:36900000-36925000,
chr21:36575000-36600000~~chr21:37650000-37675000,
chr21:36600000-36625000~~chr21:36850000-36875000,