- Basic information
- CohesinDB ID: CDBP00418541
- Locus: chr21-36643874-36644319
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Data sourse: GSE206145, GSE67783, GSE86191
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Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 49%,
"15_Quies": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMARCA2, ZSCAN5C, SOX2, MEIS2, PATZ1, FOXA1, ZFHX2, ATF3, ZFP64, ZNF362, ZBTB44, IKZF3, ZNF189, TP63, MITF, ZNF736, CDX2, ZNF467, ZNF629, MYOG, ELF1, TRIM28, ZNF121, KLF6, RBM39, KLF10, LMO2, ESR1, HNF1B, OCA2, ZNF561, JUN, CTCF, BAF155, EP300, ZBTB20, LMO1, GATA6, DPF2, PRDM4, DEK, ZNF423, ZNF528, SMC1, KLF3, TEAD4, GTF2F1, TFAP2C, JARID2, GLIS1, NANOG, CHD8, POU2F2, ZSCAN5D, ZNF263, POU5F1, BRD3, MYCN, ERF, ZBTB17, ZNF317, ZBTB48, ZSCAN5A, ZNF205, SRF, ZNF485, ERG2, ERG, HOXC5, PBX1, OGG1, ZNF341, ETS1, MYC, SMARCA4, TSHZ1, ZNF2, ARID1B, RAD21, GRHL3, GABPA, APC, NKX3-1, RCOR1, NFE2, ZNF639, CEBPB, KMT2A, CREB1, EZH2, FEZF1, GRHL2, MRTFA, HES1, SPI1, IRF1, KLF17, HDAC2, GATA2, MXD3, SIX2, FLI1, ZNF766, HCFC1R1, MRTFB, ZIM3, ZNF554, RUNX1, CTNNB1, SMC1A, HDAC1, EZH2phosphoT487, ZNF335, ZFX, SIN3A, SMAD3, ZNF770, ERG3, TET2, SMARCC1, ZNF18, PRDM10, CREBBP, ZNF35, ZNF384, ZBTB2, TAF15, RUNX2, GATA4, OSR2, ZNF184, PBX4, ARNT, ZEB2, ZNF518A, CBFA2T3, FOS, SMARCB1, MED1, TEAD3, ZXDB, MYB, KDM6B, PIAS1, SETDB1, MAFK, NIPBL, HNF4A, REST, OVOL3, CCNT2, POU2F3, ASH2L, HOXA9, PHIP, TCF3, FOXP1, PRDM6, AATF, SMC3, ZNF34, STAG1, ZNF394, TRP47, CBFA2T2, ZNF316, FOXA2, EBF1, ZNF600, ZSCAN16, ZNF692, ZNF30, WT1, MAFF, ZNF574, HOXB13, ZNF580, KDM1A, YY1, RELA, JUNB, BRG1, ZNF610, SP140, TCF4, ZIC2, HIF1A, GATA3, TAL1, MAX, GATA1, ZNF143, CBX2, KLF4, ZFP69B, SP7, GFI1B, NR2F2, TCF7L2, NEUROG2, KDM5B, NR2F1, TP53, ZNF213, ZBTB6, MED, MYOD1, EGR2, ELF3, ZNF843, BRD2, ARRB1, PAX3-FOXO1, AR, ZNF324, ZNF366, ZBTB42, HEXIM1, HSF1, RNF2, NCOR1, BRD4, CLOCK, MAZ, ZSCAN23, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): HLCS,CHAF1B,CBR3,SIM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000159231,
ENSG00000159259,
ENSG00000159263,
ENSG00000159267,
- Related loop:
chr21:27500000-27525000~~chr21:36625000-36650000,
chr21:36125000-36150000~~chr21:36625000-36650000,
chr21:36400000-36425000~~chr21:36625000-36650000,
chr21:36500000-36525000~~chr21:36625000-36650000,
chr21:36625000-36650000~~chr21:36725000-36750000,
chr21:36625000-36650000~~chr21:36850000-36875000,
chr21:36625000-36650000~~chr21:36900000-36925000,
chr21:36625000-36650000~~chr21:36925000-36950000,
chr21:36625000-36650000~~chr21:38325000-38350000,
chr21:36639891-36641654~~chr21:36926687-36928814,
chr21:36640245-36641751~~chr21:36916843-36918429,