- Basic information
- CohesinDB ID: CDBP00418546
- Locus: chr21-36651157-36651225
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 58%,
"15_Quies": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZNF675, HMG20A, XBP1, FOXA1, HLF, SUZ12, PBX2, ZNF28, ZFHX2, TFAP4, ATF3, MITF, CDX2, JMJD1C, TEAD1, ZNF121, TRIM28, KLF6, SNAI2, NFE2L2, ELF1, ESR1, HNF1B, CTCF, JUN, EP300, MNT, GATA6, SOX4, TEAD4, KMT2B, TFAP2C, RBPJ, GLIS1, POU2F2, CHD8, ZSCAN5D, MYCN, POU5F1, TOP2A, ZNF263, ID3, ZBTB17, ZBTB48, ZSCAN5A, ZNF300, ERG, ONECUT1, MYC, SMARCA4, RAD21, GRHL3, NKX2-1, STAT3, XRCC5, SOX10, HNRNPH1, NR3C1, CEBPB, ESRRA, EZH2, GRHL2, SPI1, EHF, IRF1, HDAC2, GATA2, ZNF644, FLI1, ZNF766, NFIL3, ETV5, RUNX1, ZMYM2, CEBPA, ZFX, ZNF534, SMAD3, TET2, ERG3, PRDM10, CREBBP, ZNF384, CDK6, GATA4, ARNT, PBX4, NRF1, PRDM9, SMAD4, FOS, CDK8, TEAD3, MYB, SCRT2, NR1H2, SP1, ARID1A, POU2F3, HOXA9, SMC3, STAG1, PAX7, CBFA2T2, PPARG, FOXA2, WT1, ESR2, ZBTB33, HOXB13, ZKSCAN1, KDM1A, YY1, RELA, JUNB, SP140, HIF1A, GATA3, TAL1, MAX, SPIB, GATA1, CBX2, KLF4, CEBPG, KDM5B, TP53, PKNOX1, NFKB1, ELF3, BRD2, PAX3-FOXO1, AR, RXR, YAP1, ZNF366, HSF1, RNF2, BRD4, JUND, SCRT1, CUX1, MAZ
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000159267,
- Related loop:
chr21:27500000-27525000~~chr21:36625000-36650000,
chr21:36125000-36150000~~chr21:36625000-36650000,
chr21:36400000-36425000~~chr21:36625000-36650000,
chr21:36500000-36525000~~chr21:36625000-36650000,
chr21:36625000-36650000~~chr21:36725000-36750000,
chr21:36625000-36650000~~chr21:36850000-36875000,
chr21:36625000-36650000~~chr21:36900000-36925000,
chr21:36625000-36650000~~chr21:36925000-36950000,
chr21:36625000-36650000~~chr21:38325000-38350000,
chr21:36650000-36675000~~chr21:36875000-36900000,
chr21:36650000-36675000~~chr21:36900000-36925000,
chr21:36650000-36675000~~chr21:36925000-36950000,