- Basic information
- CohesinDB ID: CDBP00418558
- Locus: chr21-36670832-36671224
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Data sourse: GSE111913, ENCSR153HNT
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Cell type: K-562, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 70%,
"15_Quies": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, CBX2, USP7, FLI1, ZBTB26, XBP1, ZBTB48, WT1, DUX4, FOXF1, OTX2, MAZ, PHOX2B, USF1, EP300, STAG1
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000159267,
- Related loop:
chr21:33025000-33050000~~chr21:36675000-36700000,
chr21:34875000-34900000~~chr21:36675000-36700000,
chr21:36125000-36150000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36675000-36700000,
chr21:36500000-36525000~~chr21:36675000-36700000,
chr21:36575000-36600000~~chr21:36675000-36700000,
chr21:36650000-36675000~~chr21:36875000-36900000,
chr21:36650000-36675000~~chr21:36900000-36925000,
chr21:36650000-36675000~~chr21:36925000-36950000,
chr21:36675000-36700000~~chr21:36900000-36925000,
chr21:36675000-36700000~~chr21:36925000-36950000,