- Basic information
- CohesinDB ID: CDBP00418560
- Locus: chr21-36674474-36675018
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 69%,
"15_Quies": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, ZSCAN5D, MYCN, ZNF331, ZFX, XBP1, GRHL3, WT1, ZSCAN5A, BRD4, MAZ, DDX5, CTCF, SPI1, STAG1, YY1
- Target gene symbol (double-evidenced CRMs): HLCS,CBR3,CHAF1B,RUNX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159216,
ENSG00000159231,
ENSG00000159259,
ENSG00000159267,
- Related loop:
chr21:33025000-33050000~~chr21:36675000-36700000,
chr21:34875000-34900000~~chr21:36675000-36700000,
chr21:36125000-36150000~~chr21:36675000-36700000,
chr21:36400000-36425000~~chr21:36675000-36700000,
chr21:36500000-36525000~~chr21:36675000-36700000,
chr21:36575000-36600000~~chr21:36675000-36700000,
chr21:36650000-36675000~~chr21:36875000-36900000,
chr21:36650000-36675000~~chr21:36900000-36925000,
chr21:36650000-36675000~~chr21:36925000-36950000,
chr21:36675000-36700000~~chr21:36900000-36925000,
chr21:36675000-36700000~~chr21:36925000-36950000,