- Basic information
- CohesinDB ID: CDBP00418575
- Locus: chr21-36737205-36737911
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Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
92% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 54%,
"15_Quies": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, FOXO1, TRP47, POU2F2, BRD1, FOXA2, ZNF263, MYCN, SIRT6, PAF1, ZFX, KDM4C, MTA2, WT1, ZSCAN5A, ZBTB48, STAT1, TET2, ERG3, DDX5, ERG2, CDK9, ZFHX2, KDM1A, ERG, RELA, CREBBP, TARDBP, ATF3, MYC, SMARCA4, CTCFL, SP140, ZIC2, GRHL3, PRDM1, MAX, AGO2, VDR, CBX2, NR3C1, TRIM28, ZNF121, SCRT2, NEUROG2, NR2F1, KDM5B, ZNF512, RBM39, OCA2, ZNF334, ZSCAN22, ZNF37A, EGR2, SREBF2, CTCF, MYOD1, JUN, AR, SOX4, YAP1, ZBTB7A, EGLN2, ZNF366, RBM25, FLI1, HSF1, RNF2, SCRT1, BRD4, BCOR, MAZ, AATF, MYF5, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): HLCS,SIM2,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159263,
ENSG00000159267,
ENSG00000182670,
- Related loop:
chr21:36475000-36500000~~chr21:36725000-36750000,
chr21:36500000-36525000~~chr21:36725000-36750000,
chr21:36575000-36600000~~chr21:36725000-36750000,
chr21:36625000-36650000~~chr21:36725000-36750000,
chr21:36725000-36750000~~chr21:36900000-36925000,
chr21:36725000-36750000~~chr21:36925000-36950000,
chr21:36725000-36750000~~chr21:37050000-37075000,