- Basic information
- CohesinDB ID: CDBP00418593
- Locus: chr21-36764124-36765173
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 54%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CRY1, ZFX, ZNF600, XBP1, POU4F2, ZSCAN16, ZNF30, ZNF317, RELA, JUNB, MYC, ZNF184, GRHL3, ARNT, ZNF189, STAT3, MAX, ZNF143, FOS, CEBPB, ZNF3, ESR1, ZNF334, JUN, ZHX2, KLF1, AR, FLI1, ZBTB26, JUND, FOXP1, STAG1
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 84
- Number of somatic mutations (non-coding): 0
- Related genes and loops