- Basic information
- CohesinDB ID: CDBP00418597
- Locus: chr21-36769074-36769743
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Data sourse: GSE206145, GSE135093, ENCSR198ZYJ, GSE73207
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Cell type: Neurons-H1, TF-1, IMR-90, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 38%,
"7_Enh": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZSCAN5C, SOX2, XBP1, FOXA1, PBX2, CHD7, ZNF322, HDAC3, KLF5, LMO2, ESR1, CTCF, TCF12, BAF155, PDX1, RBPJ, TFAP2C, NANOG, CHD8, MYCN, POU5F1, TOP2A, ZBTB48, ERG, MYC, SMARCA4, GRHL3, GABPA, STAT3, NKX3-1, RCOR1, NR3C1, EZH2, GABPB1, SPI1, KLF17, HDAC2, GATA2, RUNX1, ZFX, POU4F2, ZNF770, ERG3, SMARCC1, PRDM10, ZNF384, PRPF4, RUNX2, GATA4, SNRNP70, PIAS1, RBM22, USF1, BCL11A, REST, ASH2L, PHIP, TCF3, FOXP1, AATF, NCOR2, STAG1, TRP47, FOXA2, WT1, FOXF1, HOXB13, YY1, RELA, SP140, OTX2, GATA3, TAL1, MAX, GATA1, GFI1B, KDM5B, BRD2, AR, HEXIM1, BRD4, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops