- Basic information
- CohesinDB ID: CDBP00418599
- Locus: chr21-36775479-36775939
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Data sourse: ENCSR000BLD, ENCSR167MTG, GSE72082, ENCSR000BKV, GSE86191, ENCSR000BLS, ENCSR153HNT, GSE131606
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Cell type: H1-hESC, HCT-116, Hep-G2, K-562, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 79%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, POU2F2, HDAC2, POU5F1, MYCN, ZFX, RAD21, GRHL3, XBP1, ZBTB48, WT1, GRHL2, SMC3, CTCF, RBM22, STAG1, EED
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 0
- Related genes and loops