- Basic information
- CohesinDB ID: CDBP00418600
- Locus: chr21-36776469-36776746
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 80%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, NFIA, ZNF283, CHD8, ZNF263, TOP2A, RUNX1T1, SOX2, ZNF600, ZFX, ZBTB48, WT1, FOXA1, HOXB13, HNRNPK, RELA, ZNF384, RUNX2, NFIC, SMARCA4, OSR2, RUNX3, ZBTB44, GRHL3, NFIB, OTX2, GATA3, GATA1, NFE2, TEAD3, MYB, CTCF, ZHX2, RBM22, BCL11A, AR, ZBTB16, GATA2, RELB, PRDM6
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops