- Basic information
- CohesinDB ID: CDBP00418604
- Locus: chr21-36784984-36785378
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Data sourse: GSE111913, GSE67783, GSE86191
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Cell type: RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 61%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZNF660, XBP1, FOXA1, ZFHX2, INSM2, NFIC, ZC3H8, ATF3, ZNF362, CHD7, IKZF3, ZNF189, SMARCE1, ZSCAN4, TP63, ZNF629, TEAD1, KLF6, ESR1, OCA2, HNF1B, CTCF, TCF12, JUN, BAF155, EP300, E2F1, TEAD4, TFAP2C, EED, GLIS1, POU2F2, CHD8, ZNF239, MYCN, ZSCAN21, ZNF317, ZBTB48, ZSCAN5A, STAT1, ZNF205, DDX5, ERG2, TBP, ERG, ZBTB21, HOXC5, MYC, HOMEZ, RAD21, GRHL3, NKX2-1, APC, STAT3, NKX3-1, RCOR1, ZNF639, NR3C1, CEBPB, ZNF750, CREB1, EZH2, KLF8, GRHL2, ZHX2, IRF1, KDM5A, GATA2, MXI1, NCOA2, ZNF554, RUNX1, SMC1A, SIN3A, ZFX, ZNF534, SMAD3, ZFP37, TET2, ERG3, TWIST1, PRDM10, SMARCC1, ZBTB2, CREBBP, ZNF384, RUNX2, GATA4, OSR2, ZNF184, SP3, PBX4, NRF1, DAXX, HMGB2, ZEB2, PBX3, ETV6, ZNF10, FOS, CDK8, SMARCB1, ZEB1, ZXDB, NR1H2, TBX5, MAFK, NIPBL, SP1, BCL11A, REST, ZHX1, PHIP, HMGB1, STAG1, ZNF394, CBX3, RBBP5, PAF1, ZNF600, ZNF692, ZSCAN16, MAFF, WT1, HOXB13, BCL3, KDM1A, YY1, RELA, JUNB, NEUROD1, SP140, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, GATA1, TLE3, ZFP69B, SP7, NCOA3, TCF7L2, KDM5B, TP53, ZNF334, MYOD1, EGR2, BRD2, BHLHE40, AR, RBAK, ZNF366, HSF1, RNF2, BRD4, JUND, CLOCK, MAZ, ZNF24, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops