- Basic information
- CohesinDB ID: CDBP00418606
- Locus: chr21-36787792-36788862
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Data sourse: ENCSR853VWZ, GSE131606, GSE104888, GSE72082, GSE86191, ENCSR000BSB, GSE138405, GSE129526, GSE111913, GSE25021, ENCSR153HNT, ENCSR000EDE, ENCSR620NWG, GSE68388, ENCSR703TNG, GSE126990, GSE108869, ENCSR000ECS, GSE165895
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Cell type: MCF-7, Hela-Kyoto, HCT-116, A-549, HeLa-S3, RT-112, K-562, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 50%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, XBP1, FOXA1, SUZ12, MLL4, ZFHX2, TFAP4, LYL1, ATF3, ZC3H8, NFIC, THAP1, CTCFL, ZNF322, PRDM1, KLF14, DPF1, ZNF189, SMARCE1, HDAC3, SFPQ, CDX2, JMJD1C, ZNF629, KLF5, ELF1, TEAD1, ZNF573, KLF6, ETV1, NFE2L2, ESR1, OCA2, USF2, CTCF, TCF12, JUN, BAF155, EP300, KLF1, MNT, GATA6, DPF2, E2F6, PRDM4, TRIM24, RAD51, ZNF423, E2F1, TEAD4, KMT2B, TFAP2C, GLIS1, POU2F2, NANOG, MYCN, ERF, ZBTB17, ZBTB48, ZSCAN5A, STAT1, ERG2, ERG, HOXC5, ZNF341, ZBTB8A, MYC, RAD21, ZNF24, GRHL3, PROX1, GABPA, APC, NKX3-1, NFE2, VDR, NR3C1, CEBPB, SRSF3, CREB1, EZH2, GRHL2, ZHX2, SPI1, EHF, KLF17, HDAC2, GATA2, MXD3, FLI1, MXI1, HCFC1R1, MRTFB, ZNF554, RUNX1, SMC1A, CBX1, CEBPA, ZNF335, ZFX, SIN3A, AFF4, SMAD3, ZFP37, TET2, ERG3, SMARCC1, PRDM10, CREBBP, ZNF35, RUNX2, CDK6, GATA4, OSR2, GR, PBX4, ARNT, NRF1, DAXX, ZEB2, SP2, CHD1, CDK8, FOS, SMARCB1, MED1, ZEB1, MYB, PIAS1, ZMYM3, ZNF3, NR1H2, RBM22, USF1, NIPBL, MAFK, BCL11A, NR4A1, HNF4A, GSPT2, SP1, ARID1A, ZBTB7A, ZHX1, ASH2L, PHIP, GLIS2, FOXP1, PRDM6, SMC3, ELL2, STAG1, TRP47, PPARG, TBL1X, MTA3, EBF1, BRF2, CHD2, CBX3, ZNF600, ZNF692, FOXA2, WT1, MAFF, MEF2C, CDK9, HOXB13, BCL3, YY1, RELA, JUNB, BRG1, SP140, ZIC2, HIF1A, GATA3, MAX, NRIP1, ZNF143, AGO2, GATA1, PLAG1, TLE3, KLF4, ZNF592, SP7, ZFP69B, NCOA3, NR2F2, NR2F1, TCF7L2, KDM5B, TP53, ZNF687, PKNOX1, ZSCAN22, EGR2, ELF3, BRD2, ARRB1, BHLHE40, AR, TAF1, ZNF366, EGR1, HEXIM1, MYNN, BRD4, JUND, MAZ, BRCA1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: Developmental_language_disorder_(linguistic_errors)
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops