- Basic information
- CohesinDB ID: CDBP00418607
- Locus: chr21-36791197-36791412
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 62%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, PATZ1, FOXA1, HNRNPK, ATF3, CHD7, PRDM1, MECOM, ZNF189, PAX5, TP63, MITF, HDAC3, ZNF467, ZNF629, TRIM28, SNAI2, LMO2, ESR1, OCA2, TP73, USF2, CTCF, TCF12, JUN, BAF155, MNT, SOX4, RAD51, TEAD4, PDX1, EED, NANOG, CHD8, POU2F2, MYCN, ID3, CTBP1, ZSCAN21, ZBTB17, ZBTB48, ERG, HOXC5, ASCL1, OGG1, MYC, SMARCA4, RAD21, GRHL3, NKX2-1, GABPA, STAT3, RCOR1, ZNF639, ARNTL, NR3C1, CEBPB, CREB1, EZH2, BMPR1A, ZHX2, SPI1, HDAC2, GATA2, INTS13, FLI1, MRTFB, RUNX1, SMC1A, NKX2-2, EZH2phosphoT487, SIN3A, ZFX, ZNF534, SMAD3, PCBP2, TET2, ERG3, PRDM10, CREBBP, RARA, RUNX2, OSR2, ZNF184, ARNT, PBX4, NRF1, PRDM9, MAFB, FOS, CDK8, SMARCB1, ZEB1, SCRT2, PIAS1, C11orf30, L3MBTL2, TBX5, RBM22, MAFK, USF1, HNF4A, ARID1A, ASH2L, BCOR, STAG1, ZNF394, ZNF283, CBFA2T2, ZNF316, FOXA2, CREM, ZNF600, ZNF692, WT1, MAFF, ZBTB33, KDM1A, YY1, RELA, JUNB, SP140, TCF4, HIF1A, GATA3, ZNF519, MGA, MAX, GATA1, ZNF143, PLAG1, NCOA3, NEUROG2, KDM5B, ZNF334, NFKB1, MYOD1, ZSCAN22, T, BRD2, AR, PAX3-FOXO1, EGR1, HSF1, BRD4, SCRT1, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops