- Basic information
- CohesinDB ID: CDBP00418609
- Locus: chr21-36799566-36800146
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Data sourse: ENCSR000EFJ, ENCSR000HPG, GSE67783
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Cell type: HSPC, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, CHD8, ZFX, XBP1, RELA, JUNB, ARNT, HIF1A, HMGB2, TAL1, STAT3, SATB1, FOS, ZNF143, NR3C1, CEBPB, SCRT2, ZNF334, TBX5, JUN, RBM22, CTCF, EP300, BHLHE40, SOX4, GATA2, BRD4, SCRT1, MAZ, SMC3, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 4
- Related genes and loops