- Basic information
- CohesinDB ID: CDBP00418610
- Locus: chr21-36804012-36804366
-
Data sourse: ENCSR000BTU, GSE67783
-
Cell type: Ishikawa, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 75%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, PGR, FOXA2, MYCN, NKX2-2, ZFX, WT1, SMAD3, PBX2, RELA, ZNF384, ZNF90, RUNX2, NFIC, RAD21, ZIC2, NKX2-1, ZNF614, MAFB, NKX3-1, ZNF736, NR3C1, CEBPB, NCOA3, TEAD1, EZH2, STAG1, ESR1, TP53, GRHL2, T, RBM22, TCF12, EP300, AR, ARID1A, SIX2, NCOR1, BRD4, TEAD4, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops